PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 294aa    MW: 32080.9 Da    PI: 10.0126
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200799genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.5e-3251106357
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH r++
  MDP0000200799  51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHCRDQ 106
                    689******************************9******************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.8E-2752106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2154102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.99754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-2954105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.0E-7193244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFTTVTATI QTPDTDTEPP SPTDPKFNFF SGRSLSFTSG AFQPQPKRTR VVAYKECLKN  60
HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHCRDQYRPK NNVIRNRLLP  120
APKTAHNNHS SSSSPSSSPN PTLSPQSPPP VSHLPPSYFA APPQMLLALS SGFSGPPDEH  180
PHQHQLNPTA VMKTEKYPGE KKRSRTKFSQ EQKEKMSSLP RKSGGECKRA TKDRWRIFAA  240
RWGLGGEFLR RRLERSAGVG GGGNMIINSN VSEINGEGER LGFDSMNAHI ADNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232920.0bud| cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339904.10.0PREDICTED: zinc-finger homeodomain protein 11-like
RefseqXP_008368241.10.0PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLM5XJ802e-92M5XJ80_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.15e-37zinc finger homeodomain 1